HL_6U8K_006

3D structure

PDB id

6U8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV3

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CGUG

Length

4 nucleotides

Bulged bases

6U8K|1|B|G|233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U8K_006 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.0941

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

6U8K|1|B|C|232
6U8K|1|B|G|233
6U8K|1|B|U|234
6U8K|1|B|G|235

Current chains

Chain B

JIIIabc RNA (68-MER)

Nearby chains

Chain D

Heavy chain of Fab HCV3

Chain E

Light chain of Fab HCV3