HL_6U8K_008

3D structure

PDB id

6U8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV3

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U8K_008 not in the Motif Atlas

Geometric match to HL_3NVI_002

Geometric discrepancy: 0.1225

The information below is about HL_3NVI_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6U8K|1|C|G|180
6U8K|1|C|G|198
6U8K|1|C|A|199
6U8K|1|C|A|200
6U8K|1|C|A|201
6U8K|1|C|C|219

Current chains

Chain C

JIIIabc RNA (68-MER)

Nearby chains