3D structure

PDB id
6UBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
1.60 A resolution structure of the guanine riboswitch bound to guanine
Experimental method
X-RAY DIFFRACTION
Resolution
1.6 Å

Loop

Sequence
GUUUCUAC
Length
8 nucleotides
Bulged bases
6UBU|1|B|U|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6UBU_002 not in the Motif Atlas
Geometric match to HL_1Y27_002
Geometric discrepancy: 0.0629
The information below is about HL_1Y27_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_31585.4
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
20

Unit IDs

6UBU|1|B|G|46
6UBU|1|B|U|47
6UBU|1|B|U|48
6UBU|1|B|U|49
6UBU|1|B|C|50
6UBU|1|B|U|51
6UBU|1|B|A|52
6UBU|1|B|C|53

Current chains

Chain B
Guanine riboswitch aptamer domain

Nearby chains

No other chains within 10Å

Coloring options:


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