HL_6UCQ_230

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUCGGCC

Length

9 nucleotides

Bulged bases

6UCQ|1|2a|U|1136, 6UCQ|1|2a|C|1137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UCQ_230 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3614

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6UCQ|1|2a|G|1133
6UCQ|1|2a|G|1134
6UCQ|1|2a|U|1135
6UCQ|1|2a|U|1136
6UCQ|1|2a|C|1137
6UCQ|1|2a|G|1138
6UCQ|1|2a|G|1139
6UCQ|1|2a|C|1140
6UCQ|1|2a|C|1141

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9