HL_6UGG_001

3D structure

PDB id

6UGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of unmodified E. coli tRNA(Asp)

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

CAGUCGGUUAG

Length

11 nucleotides

Bulged bases

6UGG|1|A|U|15, 6UGG|1|A|C|16, 6UGG|1|A|G|17, 6UGG|1|A|G|18, 6UGG|1|A|U|19, 6UGG|1|A|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UGG_001 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1391

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UGG|1|A|C|12
6UGG|1|A|A|13
6UGG|1|A|G|14
6UGG|1|A|U|15
6UGG|1|A|C|16
6UGG|1|A|G|17
6UGG|1|A|G|18
6UGG|1|A|U|19
6UGG|1|A|U|20
6UGG|1|A|A|21
6UGG|1|A|G|22

Current chains

Chain A

tRNAasp

Nearby chains

Chain B

Transfer RNA; tRNA