3D structure

PDB id
6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
6UO1|1|2A|A|2030, 6UO1|1|2A|A|2031, 6UO1|1|2A|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6UO1_162 not in the Motif Atlas
Homologous match to HL_7RQB_050
Geometric discrepancy: 0.0889
The information below is about HL_7RQB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.6
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
6

Unit IDs

6UO1|1|2A|G|2027
6UO1|1|2A|U|2028
6UO1|1|2A|G|2029
6UO1|1|2A|A|2030
6UO1|1|2A|A|2031
6UO1|1|2A|G|2032
6UO1|1|2A|A|2033
6UO1|1|2A|U|2034
6UO1|1|2A|G|2035
6UO1|1|2A|C|2036

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 25
50S ribosomal protein L32
Chain 2E
50S ribosomal protein L3

Coloring options:


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