HL_6UO1_166

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6UO1|1|2A|A|2268, 6UO1|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UO1_166 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0742

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6UO1|1|2A|C|2264
6UO1|1|2A|U|2265
6UO1|1|2A|A|2266
6UO1|1|2A|A|2267
6UO1|1|2A|A|2268
6UO1|1|2A|A|2269
6UO1|1|2A|G|2270
6UO1|1|2A|G|2271
6UO1|1|2A|U|2272
6UO1|1|2A|A|2273
6UO1|1|2A|A|2274
6UO1|1|2A|C|2275
6UO1|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16