HL_6UO1_167

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UO1_167 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3095

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6UO1|1|2A|G|2302
6UO1|1|2A|G|2303
6UO1|1|2A|G|2304
6UO1|1|2A|A|2305
6UO1|1|2A|C|2306
6UO1|1|2A|G|2307
6UO1|1|2A|G|2308
6UO1|1|2A|A|2309
6UO1|1|2A|A|2310
6UO1|1|2A|A|2311
6UO1|1|2A|U|2312
6UO1|1|2A|C|2313
6UO1|1|2A|C|2314

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5