HL_6UO1_197

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UO1_197 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.121

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6UO1|1|2a|G|617
6UO1|1|2a|C|618
6UO1|1|2a|U|619
6UO1|1|2a|C|620
6UO1|1|2a|A|621
6UO1|1|2a|A|622
6UO1|1|2a|C|623

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2p

30S ribosomal protein S16