HL_6UO1_238

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGG(5MU)(PSU)CGAUUCCG

Length

13 nucleotides

Bulged bases

6UO1|1|2y|PSU|55

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UO1_238 not in the Motif Atlas

Homologous match to HL_5EL4_250

Geometric discrepancy: 0.5488

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6UO1|1|2y|U|51
6UO1|1|2y|G|52
6UO1|1|2y|G|53
6UO1|1|2y|5MU|54
6UO1|1|2y|PSU|55
6UO1|1|2y|C|56
6UO1|1|2y|G|57
6UO1|1|2y|A|58
6UO1|1|2y|U|59
6UO1|1|2y|U|60
6UO1|1|2y|C|61
6UO1|1|2y|C|62
6UO1|1|2y|G|63

Current chains

Chain 2y

A-site and E-site tRNAs

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2a

Small subunit ribosomal RNA; SSU rRNA