HL_6UZ7_037

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGAAGGUAG

Length

10 nucleotides

Bulged bases

6UZ7|1|3|G|18, 6UZ7|1|3|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_037 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.5453

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6UZ7|1|3|C|13
6UZ7|1|3|A|14
6UZ7|1|3|G|15
6UZ7|1|3|A|16
6UZ7|1|3|A|17
6UZ7|1|3|G|18
6UZ7|1|3|G|19
6UZ7|1|3|U|20
6UZ7|1|3|A|21
6UZ7|1|3|G|22

Current chains

Chain 3

RNA (76-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA