HL_6UZ7_046

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

6UZ7|1|5|G|218, 6UZ7|1|5|A|219, 6UZ7|1|5|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_046 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.0864

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6UZ7|1|5|G|216
6UZ7|1|5|U|217
6UZ7|1|5|G|218
6UZ7|1|5|A|219
6UZ7|1|5|G|220
6UZ7|1|5|A|221
6UZ7|1|5|A|222
6UZ7|1|5|U|223
6UZ7|1|5|C|224

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

KLLA0B07139p

Chain AY

KLLA0B05742p