HL_6UZ7_060

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6UZ7|1|5|A|884, 6UZ7|1|5|G|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_060 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1066

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6UZ7|1|5|G|881
6UZ7|1|5|C|882
6UZ7|1|5|G|883
6UZ7|1|5|A|884
6UZ7|1|5|A|885
6UZ7|1|5|A|886
6UZ7|1|5|G|887
6UZ7|1|5|A|888
6UZ7|1|5|C|889

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AA

KLLA0D16027p

Chain AN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37