HL_6UZ7_070

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_070 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.144

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6UZ7|1|5|A|1433
6UZ7|1|5|U|1434
6UZ7|1|5|G|1435
6UZ7|1|5|A|1436
6UZ7|1|5|G|1437
6UZ7|1|5|A|1438
6UZ7|1|5|A|1439
6UZ7|1|5|C|1440
6UZ7|1|5|U|1441

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AP

KLLA0A06336p

Chain AR

KLLA0E12453p

Chain Bd

KLLA0B02937p