3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CUGGGAAG
Length
8 nucleotides
Bulged bases
6V39|1|AN1|A|313
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V39_009 not in the Motif Atlas
Homologous match to HL_7A0S_010
Geometric discrepancy: 0.1363
The information below is about HL_7A0S_010
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

6V39|1|AN1|C|307
6V39|1|AN1|U|308
6V39|1|AN1|G|309
6V39|1|AN1|G|310
6V39|1|AN1|G|311
6V39|1|AN1|A|312
6V39|1|AN1|A|313
6V39|1|AN1|G|314

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L24

Coloring options:


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