HL_6V39_013

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6V39|1|AN1|G|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0998

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6V39|1|AN1|G|409
6V39|1|AN1|G|410
6V39|1|AN1|A|411
6V39|1|AN1|C|412
6V39|1|AN1|C|413
6V39|1|AN1|A|414
6V39|1|AN1|U|415
6V39|1|AN1|C|416

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains