HL_6V39_028

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCUUAGAAGCAGCC

Length

14 nucleotides

Bulged bases

6V39|1|AN1|U|1062, 6V39|1|AN1|U|1063, 6V39|1|AN1|A|1064, 6V39|1|AN1|G|1065, 6V39|1|AN1|A|1067, 6V39|1|AN1|G|1068, 6V39|1|AN1|C|1069

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_028 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3557

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6V39|1|AN1|G|1060
6V39|1|AN1|C|1061
6V39|1|AN1|U|1062
6V39|1|AN1|U|1063
6V39|1|AN1|A|1064
6V39|1|AN1|G|1065
6V39|1|AN1|A|1066
6V39|1|AN1|A|1067
6V39|1|AN1|G|1068
6V39|1|AN1|C|1069
6V39|1|AN1|A|1070
6V39|1|AN1|G|1071
6V39|1|AN1|C|1072
6V39|1|AN1|C|1073

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains