HL_6V39_032

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUGAAAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_032 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1546

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6V39|1|AN1|G|1276
6V39|1|AN1|U|1277
6V39|1|AN1|G|1278
6V39|1|AN1|A|1279
6V39|1|AN1|A|1280
6V39|1|AN1|A|1281
6V39|1|AN1|A|1282
6V39|1|AN1|A|1283
6V39|1|AN1|C|1284

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32