HL_6V39_041

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6V39|1|AN1|U|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_041 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.0915

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6V39|1|AN1|C|1689
6V39|1|AN1|U|1690
6V39|1|AN1|U|1691
6V39|1|AN1|C|1692
6V39|1|AN1|G|1693
6V39|1|AN1|G|1694

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain sN1

Small subunit ribosomal RNA; SSU rRNA