3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CGUAAG
Length
6 nucleotides
Bulged bases
6V39|1|AN1|U|1866
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V39_046 not in the Motif Atlas
Homologous match to HL_5J7L_180
Geometric discrepancy: 0.5014
The information below is about HL_5J7L_180
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6V39|1|AN1|C|1864
6V39|1|AN1|G|1865
6V39|1|AN1|U|1866
6V39|1|AN1|A|1867
6V39|1|AN1|A|1868
6V39|1|AN1|G|1869

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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