HL_6V39_058

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGUAUGGAAG

Length

10 nucleotides

Bulged bases

6V39|1|AN1|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1154

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6V39|1|AN1|U|2400
6V39|1|AN1|G|2401
6V39|1|AN1|U|2402
6V39|1|AN1|A|2403
6V39|1|AN1|U|2404
6V39|1|AN1|G|2405
6V39|1|AN1|G|2406
6V39|1|AN1|A|2407
6V39|1|AN1|A|2408
6V39|1|AN1|G|2409

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15