HL_6V39_065

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6V39|1|AN1|G|2747, 6V39|1|AN1|C|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1132

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6V39|1|AN1|C|2741
6V39|1|AN1|U|2742
6V39|1|AN1|G|2743
6V39|1|AN1|A|2744
6V39|1|AN1|A|2745
6V39|1|AN1|A|2746
6V39|1|AN1|G|2747
6V39|1|AN1|C|2748
6V39|1|AN1|A|2749
6V39|1|AN1|U|2750
6V39|1|AN1|C|2751
6V39|1|AN1|U|2752
6V39|1|AN1|A|2753
6V39|1|AN1|A|2754
6V39|1|AN1|G|2755

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L13