HL_6V39_077
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6V39_077 not in the Motif Atlas
- Homologous match to HL_5J7L_007
- Geometric discrepancy: 0.1059
- The information below is about HL_5J7L_007
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
6V39|1|sN1|U|292
6V39|1|sN1|G|293
6V39|1|sN1|A|294
6V39|1|sN1|G|295
6V39|1|sN1|A|296
6V39|1|sN1|G|297
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain e
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S8
- Chain q
- 30S ribosomal protein S17
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