HL_6V39_083

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_083 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2785

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6V39|1|sN1|G|518
6V39|1|sN1|C|519
6V39|1|sN1|A|520
6V39|1|sN1|G|521
6V39|1|sN1|C|522
6V39|1|sN1|C|523
6V39|1|sN1|7MG|524
6V39|1|sN1|C|525

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12