HL_6V39_088

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUUGAG

Length

7 nucleotides

Bulged bases

6V39|1|sN1|U|838, 6V39|1|sN1|U|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.298

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6V39|1|sN1|C|837
6V39|1|sN1|U|838
6V39|1|sN1|U|839
6V39|1|sN1|U|840
6V39|1|sN1|G|841
6V39|1|sN1|A|842
6V39|1|sN1|G|843

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S18