HL_6V39_095

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6V39|1|sN1|A|1089, 6V39|1|sN1|G|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_095 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.4537

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6V39|1|sN1|G|1086
6V39|1|sN1|U|1087
6V39|1|sN1|U|1088
6V39|1|sN1|A|1089
6V39|1|sN1|A|1090
6V39|1|sN1|G|1091
6V39|1|sN1|U|1092
6V39|1|sN1|C|1093

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7