HL_6V39_100

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6V39|1|sN1|U|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_100 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1112

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6V39|1|sN1|G|1353
6V39|1|sN1|A|1354
6V39|1|sN1|U|1355
6V39|1|sN1|C|1356
6V39|1|sN1|A|1357
6V39|1|sN1|G|1358
6V39|1|sN1|A|1359
6V39|1|sN1|A|1360
6V39|1|sN1|U|1361
6V39|1|sN1|G|1362
6V39|1|sN1|C|1363

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14