HL_6V39_101

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUGCAAAG

Length

8 nucleotides

Bulged bases

6V39|1|sN1|A|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_101 not in the Motif Atlas

Geometric match to HL_6CZR_076

Geometric discrepancy: 0.3993

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6V39|1|sN1|C|1445
6V39|1|sN1|U|1446
6V39|1|sN1|G|1447
6V39|1|sN1|C|1448
6V39|1|sN1|A|1449
6V39|1|sN1|A|1450
6V39|1|sN1|A|1451
6V39|1|sN1|G|1452

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20