HL_6V39_106

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6V39|1|AN1|U|955, 6V39|1|AN1|C|958

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_106 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1539

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6V39|1|AN1|PSU|952
6V39|1|AN1|G|953
6V39|1|AN1|C|954
6V39|1|AN1|U|955
6V39|1|AN1|A|956
6V39|1|AN1|A|957
6V39|1|AN1|C|958
6V39|1|AN1|G|959

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16