HL_6V39_110

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

6V39|1|AN1|U|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_110 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5362

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6V39|1|AN1|G|1088
6V39|1|AN1|C|1089
6V39|1|AN1|G|1090
6V39|1|AN1|U|1091
6V39|1|AN1|A|1092
6V39|1|AN1|A|1093
6V39|1|AN1|U|1094
6V39|1|AN1|A|1095
6V39|1|AN1|G|1096
6V39|1|AN1|C|1097

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains