3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CGUUGAAAAG
Length
10 nucleotides
Bulged bases
6V3A|1|AN1|U|745, 6V3A|1|AN1|A|749, 6V3A|1|AN1|A|750
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3A_022 not in the Motif Atlas
Geometric match to HL_4WF9_023
Geometric discrepancy: 0.1398
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

6V3A|1|AN1|C|742
6V3A|1|AN1|G|743
6V3A|1|AN1|U|744
6V3A|1|AN1|U|745
6V3A|1|AN1|G|746
6V3A|1|AN1|A|747
6V3A|1|AN1|A|748
6V3A|1|AN1|A|749
6V3A|1|AN1|A|750
6V3A|1|AN1|G|751

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain D
50S ribosomal protein L3
Chain R
50S ribosomal protein L22
Chain Z
50S ribosomal protein L32

Coloring options:


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