HL_6V3A_036

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGUUGGUUG

Length

9 nucleotides

Bulged bases

6V3A|1|AN1|U|1448, 6V3A|1|AN1|U|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1269

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6V3A|1|AN1|C|1446
6V3A|1|AN1|G|1447
6V3A|1|AN1|U|1448
6V3A|1|AN1|U|1449
6V3A|1|AN1|G|1450
6V3A|1|AN1|G|1451
6V3A|1|AN1|U|1452
6V3A|1|AN1|U|1453
6V3A|1|AN1|G|1454

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17