HL_6V3A_048

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6V3A|1|AN1|U|1951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_048 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.105

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6V3A|1|AN1|G|1945
6V3A|1|AN1|G|1946
6V3A|1|AN1|U|1947
6V3A|1|AN1|A|1948
6V3A|1|AN1|A|1949
6V3A|1|AN1|G|1950
6V3A|1|AN1|U|1951
6V3A|1|AN1|U|1952
6V3A|1|AN1|C|1953

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14

Chain sN1

Small subunit ribosomal RNA; SSU rRNA