3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
6V3A|1|AN1|A|2264, 6V3A|1|AN1|C|2271
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3A_053 not in the Motif Atlas
Homologous match to HL_5J7L_187
Geometric discrepancy: 0.1048
The information below is about HL_5J7L_187
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6V3A|1|AN1|C|2260
6V3A|1|AN1|U|2261
6V3A|1|AN1|A|2262
6V3A|1|AN1|A|2263
6V3A|1|AN1|A|2264
6V3A|1|AN1|G|2265
6V3A|1|AN1|A|2266
6V3A|1|AN1|G|2267
6V3A|1|AN1|U|2268
6V3A|1|AN1|A|2269
6V3A|1|AN1|A|2270
6V3A|1|AN1|C|2271
6V3A|1|AN1|G|2272

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L16
Chain V
50S ribosomal protein L27

Coloring options:


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