3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CCCACAAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3A_056 not in the Motif Atlas
Homologous match to HL_4WF9_053
Geometric discrepancy: 0.1541
The information below is about HL_4WF9_053
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6V3A|1|AN1|C|2351
6V3A|1|AN1|C|2352
6V3A|1|AN1|C|2353
6V3A|1|AN1|A|2354
6V3A|1|AN1|C|2355
6V3A|1|AN1|A|2356
6V3A|1|AN1|A|2357
6V3A|1|AN1|G|2358

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain K
50S ribosomal protein L15
Chain V
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0831 s