HL_6V3A_060

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAGCAG

Length

8 nucleotides

Bulged bases

6V3A|1|AN1|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1583

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6V3A|1|AN1|U|2524
6V3A|1|AN1|G|2525
6V3A|1|AN1|A|2526
6V3A|1|AN1|A|2527
6V3A|1|AN1|G|2528
6V3A|1|AN1|C|2529
6V3A|1|AN1|A|2530
6V3A|1|AN1|G|2531

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain G

50S ribosomal protein L6