3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GACUGAGACACGGC
Length
14 nucleotides
Bulged bases
6V3A|1|sN1|C|326, 6V3A|1|sN1|G|327
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3A_078 not in the Motif Atlas
Homologous match to HL_5J7L_008
Geometric discrepancy: 0.1278
The information below is about HL_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6V3A|1|sN1|G|316
6V3A|1|sN1|A|317
6V3A|1|sN1|C|318
6V3A|1|sN1|U|319
6V3A|1|sN1|G|320
6V3A|1|sN1|A|321
6V3A|1|sN1|G|322
6V3A|1|sN1|A|323
6V3A|1|sN1|C|324
6V3A|1|sN1|A|325
6V3A|1|sN1|C|326
6V3A|1|sN1|G|327
6V3A|1|sN1|G|328
6V3A|1|sN1|C|329

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain p
30S ribosomal protein S16
Chain t
30S ribosomal protein S20

Coloring options:


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