HL_6V3A_088

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUUGAG

Length

7 nucleotides

Bulged bases

6V3A|1|sN1|U|838, 6V3A|1|sN1|U|839

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_088 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.389

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6V3A|1|sN1|C|837
6V3A|1|sN1|U|838
6V3A|1|sN1|U|839
6V3A|1|sN1|U|840
6V3A|1|sN1|G|841
6V3A|1|sN1|A|842
6V3A|1|sN1|G|843

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S18