HL_6V3B_078

3D structure

PDB id

6V3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3B_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1384

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6V3B|1|sN1|G|316
6V3B|1|sN1|A|317
6V3B|1|sN1|C|318
6V3B|1|sN1|U|319
6V3B|1|sN1|G|320
6V3B|1|sN1|A|321
6V3B|1|sN1|G|322
6V3B|1|sN1|A|323
6V3B|1|sN1|C|324
6V3B|1|sN1|A|325
6V3B|1|sN1|C|326
6V3B|1|sN1|G|327
6V3B|1|sN1|G|328
6V3B|1|sN1|C|329

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20