HL_6V3D_052

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6V3D|1|AN1|G|2246

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_052 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1074

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6V3D|1|AN1|C|2244
6V3D|1|AN1|U|2245
6V3D|1|AN1|G|2246
6V3D|1|AN1|OMG|2247
6V3D|1|AN1|G|2248
6V3D|1|AN1|G|2249
6V3D|1|AN1|C|2250
6V3D|1|AN1|G|2251
6V3D|1|AN1|G|2252

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27