RNA 3D Hub //

6V3D Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6V3D_0011/AN1/66:75No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_6V3D_0021/AN1/93:104No text annotation
HL_6V3D_0031/AN1/130:135No text annotation
homologous
HL_5J7L_136
HL_82710.2
HL_6V3D_0041/AN1/144:149No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_6V3D_0051/AN1/165:175No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_6V3D_0061/AN1/201:208No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_6V3D_0071/AN1/232:237No text annotation
homologous
HL_4WF9_007
HL_53890.2
HL_6V3D_0081/AN1/253:259No text annotation
homologous
HL_4WF9_008
HL_37369.2
HL_6V3D_0091/AN1/307:314T-loop with 1 bulged base
geometric
HL_7A0S_010
HL_01609.3
HL_6V3D_0101/AN1/321:325No text annotation
homologous
HL_5J7L_143
HL_75660.5
HL_6V3D_0111/AN1/329:337T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_6V3D_0121/AN1/381:391No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_6V3D_0131/AN1/409:416Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.3
HL_6V3D_0141/AN1/461:466GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_6V3D_0151/AN1/486:492GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_6V3D_0161/AN1/543:546Mini UNCG
geometric
HL_5TBW_071
NA
HL_6V3D_0171/AN1/564:573T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.6
HL_6V3D_0181/AN1/609:615No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_6V3D_0191/AN1/627:632GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_6V3D_0201/AN1/639:645No text annotation
homologous
HL_7RQB_021
NA
HL_6V3D_0211/AN1/710:717No text annotation
homologous
HL_7RQB_022
NA
HL_6V3D_0221/AN1/742:751No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_6V3D_0231/AN1/777:783No text annotation
homologous
HL_5J7L_156
HL_87954.2
HL_6V3D_0241/AN1/824:829No text annotation
homologous
HL_7RQB_025
NA
HL_6V3D_0251/AN1/882:890No text annotation
HL_6V3D_0721/AN1/952:959GNRA
homologous
HL_5J7L_211
HL_37824.7
HL_6V3D_0271/AN1/975:982No text annotation
homologous
HL_5J7L_160
HL_42998.2
HL_6V3D_0281/AN1/1060:1073Externally structured
geometric
HL_8C3A_022
NA
HL_6V3D_0751/AN1/1088:1097No text annotation
homologous
HL_5J7L_212
HL_75293.5
HL_6V3D_0301/AN1/1166:1176No text annotation
HL_6V3D_0311/AN1/1217:1222GNRA
homologous
HL_7A0S_031
HL_37824.7
HL_6V3D_0321/AN1/1276:1284T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.6
HL_6V3D_0331/AN1/1319:1325Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_6V3D_0341/AN1/1358:1363GNRA
homologous
HL_7RQB_035
NA
HL_6V3D_0351/AN1/1384:1393No text annotation
homologous
HL_5J7L_168
HL_81545.2
HL_6V3D_0361/AN1/1446:1454Mini UNCG with extended bulge
geometric
HL_5J7L_169
HL_22622.1
HL_6V3D_0371/AN1/1487:1493Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_6V3D_0381/AN1/1563:1566Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_6V3D_0391/AN1/1610:1617No text annotation
homologous
HL_4WF9_038
HL_89567.2
HL_6V3D_0401/AN1/1628:1634GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_6V3D_0411/AN1/1689:1694UNCG
geometric
HL_4LFB_009
HL_34617.5
HL_6V3D_0421/AN1/1723:1729No text annotation
geometric
HL_6VMY_004
HL_53890.2
HL_6V3D_0431/AN1/1748:1752No text annotation
homologous
HL_7RQB_044
NA
HL_6V3D_0441/AN1/1773:1783No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_6V3D_0451/AN1/1802:1807GNRA
homologous
HL_7RQB_046
NA
HL_6V3D_0461/AN1/1864:1869GNRA variation
homologous
HL_5J7L_180
HL_37824.7
HL_6V3D_0471/AN1/1906:1916No text annotation
HL_6V3D_0481/AN1/1945:1953No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_6V3D_0491/AN1/2023:2032No text annotation
homologous
HL_5J7L_183
HL_61996.2
HL_6V3D_0501/AN1/2136:2148No text annotation
HL_6V3D_0511/AN1/2205:2211No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_6V3D_0521/AN1/2244:2252No text annotation
homologous
HL_4WF9_049
HL_85367.2
HL_6V3D_0531/AN1/2260:2272No text annotation
homologous
HL_5J7L_187
HL_91939.2
HL_6V3D_0731/AN1/2300:2308No text annotation
homologous
HL_5J7L_219
HL_50860.2
HL_6V3D_0551/AN1/2320:2327Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_6V3D_0561/AN1/2351:2358GNRA with extra cWW
homologous
HL_4WF9_053
HL_04259.3
HL_6V3D_0571/AN1/2370:2375GNRA
homologous
HL_5J7L_191
HL_37824.7
HL_6V3D_0581/AN1/2400:2409No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_6V3D_0591/AN1/2467:2475No text annotation
HL_6V3D_0601/AN1/2524:2531No text annotation
homologous
HL_5J7L_194
HL_31585.3
HL_6V3D_0611/AN1/2547:2553No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_6V3D_0621/AN1/2590:2595GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_6V3D_0631/AN1/2654:2659GNRA
geometric
HL_7A0S_063
HL_37824.7
HL_6V3D_0641/AN1/2697:2702Ribsomal LSU H95
homologous
HL_7A0S_064
HL_65794.5
HL_6V3D_0651/AN1/2741:2755No text annotation
homologous
HL_4WF9_062
HL_74055.2
HL_6V3D_0661/AN1/2792:2795No text annotation
geometric
HL_6U8D_003
HL_32346.3
HL_6V3D_0671/AN1/2815:2823No text annotation
homologous
HL_7RQB_068
NA
HL_6V3D_0681/AN1/2852:2857GNRA
homologous
HL_4WF9_065
HL_37824.7
HL_6V3D_0691/B/36:42No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_6V3D_0701/B/83:88No text annotation
geometric
HL_1WZ2_007
HL_75660.5

Problematic loops

#loop idProblemSequence
HL_6V3D_071No text annotation
HL_6V3D_026No text annotation
HL_6V3D_029No text annotation
HL_6V3D_054No text annotation
HL_6V3D_074No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6V3D_0011/AN1/31:37,
1/AN1/509:515		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
IL_04021.2
IL_6V3D_0021/AN1/43:44,
1/AN1/441:443		Single bulged A
homologous
IL_5J7L_246
IL_31462.5
IL_6V3D_0031/AN1/50:51,
1/AN1/433:435		Minor groove platform
homologous
IL_5J7L_247
IL_51454.2
IL_6V3D_0041/AN1/88:92,
1/AN1/105:112		Kink-turn
homologous
IL_7RQB_004
NA
IL_6V3D_0051/AN1/190:191,
1/AN1/219:221		Single stack bend
homologous
IL_7A0S_005
IL_90729.1
IL_6V3D_0061/AN1/195:201,
1/AN1/208:215		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_04346.10
IL_6V3D_0071/AN1/246:252,
1/AN1/260:265		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_6V3D_0081/AN1/276:282,
1/AN1/362:369		No text annotation
IL_6V3D_0091/AN1/295:297,
1/AN1/345:349		No text annotation
homologous
IL_7RQB_013
NA
IL_6V3D_0101/AN1/305:307,
1/AN1/314:316		Isolated non-canonical cWW pair
geometric
IL_3SZX_001
IL_87907.2
IL_6V3D_0111/AN1/480:483,
1/AN1/495:508		No text annotation
geometric
IL_5J7L_255
IL_81516.2
IL_6V3D_0121/AN1/535:538,
1/AN1/552:555		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_6V3D_0131/AN1/542:543,
1/AN1/546:548		Single bulged U
geometric
IL_7RQB_008
NA
IL_6V3D_0141/AN1/562:564,
1/AN1/573:575		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_07785.1
IL_6V3D_0151/AN1/604:608,
1/AN1/616:620		AAA cross-strand stack
homologous
IL_7RQB_016
NA
IL_6V3D_0161/AN1/670:672,
1/AN1/804:806		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_6V3D_0171/AN1/672:676,
1/AN1/797:804		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
IL_54041.2
IL_6V3D_0181/AN1/695:696,
1/AN1/761:763		Single bulged A
geometric
IL_4V9F_025
IL_31462.5
IL_6V3D_0191/AN1/700:701,
1/AN1/726:728		Single bulged G
homologous
IL_7RQB_020
NA
IL_6V3D_0201/AN1/701:705,
1/AN1/722:726		Triple sheared
geometric
IL_4WF9_024
IL_50730.2
IL_6V3D_0211/AN1/736:738,
1/AN1/755:756		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_6V3D_0221/AN1/740:742,
1/AN1/751:753		Isolated non-canonical cWW pair
homologous
IL_7A0S_020
IL_87907.2
IL_6V3D_0231/AN1/773:775,
1/AN1/785:789		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_6V3D_0241/AN1/841:845,
1/AN1/930:932		No text annotation
IL_6V3D_1171/AN1/841:846,
1/AN1/928:932		No text annotation
IL_6V3D_0251/AN1/845:846,
1/AN1/928:930		No text annotation
IL_6V3D_0261/AN1/848:849,
1/AN1/924:926		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_6V3D_0271/AN1/854:860,
1/AN1/913:919		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_6V3D_0281/AN1/860:861,
1/AN1/911:913		Minor groove platform
geometric
IL_7A0S_028
IL_51454.2
IL_6V3D_0291/AN1/862:867,
1/AN1/906:910		C-loop with extra cWW pair
geometric
IL_4V88_408
NA
IL_6V3D_0301/AN1/868:870,
1/AN1/903:905		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_6V3D_0311/AN1/873:877,
1/AN1/896:900		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_6V3D_0321/AN1/878:881,
1/AN1/891:895		Tandem non-canonical cWW pairs
geometric
IL_3WBM_003
IL_85033.2
IL_6V3D_0331/AN1/991:993,
1/AN1/1157:1158		Single bulged C
homologous
IL_7RQB_035
NA
IL_6V3D_0341/AN1/995:999,
1/AN1/1151:1155		UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_6V3D_0351/AN1/1001:1008,
1/AN1/1148:1149		SSU/LSU pseudoknot
geometric
IL_4WF9_037
IL_41203.4
IL_6V3D_0361/AN1/1008:1010,
1/AN1/1147:1148		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_6V3D_0371/AN1/1015:1021,
1/AN1/1137:1142		No text annotation
homologous
IL_7RQB_039
NA
IL_6V3D_0381/AN1/1021:1027,
1/AN1/1121:1137		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_6V3D_0391/AN1/1028:1031,
1/AN1/1118:1120		Isolated non-canonical cWW pair
geometric
IL_7A0S_038
IL_57744.1
IL_6V3D_0401/AN1/1035:1038,
1/AN1/1111:1114		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_6V3D_0411/AN1/1038:1048,
1/AN1/1105:1111		No text annotation
IL_6V3D_0421/AN1/1054:1056,
1/AN1/1077:1078		Single stack bend
geometric
IL_7KGA_006
IL_26793.1
IL_6V3D_0431/AN1/1056:1060,
1/AN1/1073:1077		No text annotation
IL_6V3D_0441/AN1/1191:1193,
1/AN1/1242:1245		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.3
IL_6V3D_0451/AN1/1197:1201,
1/AN1/1235:1238		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_6V3D_0461/AN1/1203:1210,
1/AN1/1229:1233		Kink-turn
homologous
IL_7RQB_047
NA
IL_6V3D_0471/AN1/1257:1264,
1/AN1/2007:2013		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_6V3D_0481/AN1/1305:1308,
1/AN1/1601:1602		Major groove platform; stack outside cWW
homologous
IL_5J7L_290
IL_50694.7
IL_6V3D_0491/AN1/1314:1318,
1/AN1/1326:1328		Major groove minor groove platform with tHH
homologous
IL_4WF9_050
IL_83150.2
IL_6V3D_0501/AN1/1346:1350,
1/AN1/1371:1375		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_6V3D_0511/AN1/1352:1356,
1/AN1/1365:1369		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_6V3D_1181/AN1/1410:1411,
1/AN1/1580:1585		No text annotation
homologous
IL_9DFE_053
IL_00881.1
IL_6V3D_0531/AN1/1412:1416,
1/AN1/1575:1579		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_6V3D_0541/AN1/1427:1430,
1/AN1/1555:1559		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_6V3D_0551/AN1/1432:1435,
1/AN1/1549:1553		tSH-tHW
homologous
IL_7RQB_057
NA
IL_6V3D_0561/AN1/1445:1446,
1/AN1/1454:1456		Single bulged U
homologous
IL_5J7L_298
IL_89505.4
IL_6V3D_0571/AN1/1468:1473,
1/AN1/1509:1514		tSH-tHW-tHS-cWW
geometric
IL_3LQX_002
IL_76308.6
IL_6V3D_0581/AN1/1476:1479,
1/AN1/1500:1506		No text annotation
IL_6V3D_0591/AN1/1480:1486,
1/AN1/1494:1499		No text annotation
IL_6V3D_0601/AN1/1649:1654,
1/AN1/2000:2002		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_6V3D_0611/AN1/1661:1663,
1/AN1/1991:1993		Isolated tWW turn
homologous
IL_4WF9_063
IL_67095.2
IL_6V3D_0621/AN1/1664:1667,
1/AN1/1989:1990		Major groove platform; stack outside cWW
homologous
IL_7RQB_066
NA
IL_6V3D_1191/AN1/1664:1672,
1/AN1/1986:1990		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_6V3D_0631/AN1/1667:1672,
1/AN1/1986:1989		Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_6V3D_0641/AN1/1684:1689,
1/AN1/1694:1700		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_6V3D_0651/AN1/1716:1720,
1/AN1/1732:1736		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_6V3D_0661/AN1/1766:1767,
1/AN1/1976:1978		Single bulged A
homologous
IL_4WF9_068
IL_31462.5
IL_6V3D_0671/AN1/1794:1800,
1/AN1/1809:1817		Kink-turn related
homologous
IL_7A0S_065
IL_17069.5
IL_6V3D_0681/AN1/1833:1836,
1/AN1/1898:1899		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_6V3D_0691/AN1/1837:1838,
1/AN1/1894:1897		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_6V3D_0701/AN1/1842:1845,
1/AN1/1889:1890		No text annotation
IL_6V3D_1211/AN1/1847:1856,
1/AN1/1878:1887		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_6V3D_0711/AN1/1860:1863,
1/AN1/1870:1874		No text annotation
IL_6V3D_0721/AN1/1929:1930,
1/AN1/1960:1963		Bulged stacked bases
geometric
IL_7A0S_071
IL_22551.3
IL_6V3D_0731/AN1/1930:1941,
1/AN1/1957:1960		No text annotation
homologous
IL_4WF9_077
IL_42218.2
IL_6V3D_0741/AN1/2045:2048,
1/AN1/2613:2615		No text annotation
geometric
IL_6DME_003
IL_55516.2
IL_6V3D_0751/AN1/2050:2052,
1/AN1/2608:2611		No text annotation
homologous
IL_5J7L_321
IL_83389.2
IL_6V3D_1231/AN1/2063:2065,
1/AN1/2438:2439		Single bulged U
homologous
IL_4WF9_080
IL_89505.4
IL_6V3D_0781/AN1/2066:2067,
1/AN1/2434:2437		Minor groove platform
homologous
IL_5J7L_324
IL_51454.2
IL_6V3D_0791/AN1/2077:2079,
1/AN1/2232:2235		Isolated tHS basepair with bulges
homologous
IL_7RQB_082
NA
IL_6V3D_0801/AN1/2081:2083,
1/AN1/2228:2230		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_6V3D_0811/AN1/2098:2101,
1/AN1/2181:2183		No text annotation
IL_6V3D_0821/AN1/2101:2102,
1/AN1/2179:2181		No text annotation
IL_6V3D_0831/AN1/2104:2106,
1/AN1/2175:2177		Isolated non-canonical cWW pair
homologous
IL_3U4M_001
IL_28037.2
IL_6V3D_0841/AN1/2106:2112,
1/AN1/2161:2175		No text annotation
IL_6V3D_1241/AN1/2106:2133,
1/AN1/2150:2175		No text annotation
IL_6V3D_0851/AN1/2112:2133,
1/AN1/2150:2161		No text annotation
IL_6V3D_0861/AN1/2133:2136,
1/AN1/2148:2150		No text annotation
IL_6V3D_0871/AN1/2198:2200,
1/AN1/2216:2217		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_6V3D_0881/AN1/2346:2349,
1/AN1/2360:2363		Double sheared
homologous
IL_7RQB_089
NA
IL_6V3D_0891/AN1/2397:2399,
1/AN1/2410:2411		Single bulged U
homologous
IL_5J7L_334
IL_89505.4
IL_6V3D_0901/AN1/2449:2450,
1/AN1/2494:2496		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_6V3D_0911/AN1/2450:2451,
1/AN1/2492:2494		Major groove platform
homologous
IL_7RQB_092
NA
IL_6V3D_1261/AN1/2453:2455,
1/AN1/2489:2490		Major groove platform
homologous
IL_5J7L_393
IL_07039.3
IL_6V3D_1271/AN1/2455:2457,
1/AN1/2485:2489		Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_51387.2
IL_6V3D_0941/AN1/2462:2466,
1/AN1/2476:2480		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_6V3D_1281/AN1/2503:2504,
1/AN1/2576:2578		Major groove platform
homologous
IL_5J7L_394
IL_07039.3
IL_6V3D_0961/AN1/2506:2508,
1/AN1/2570:2574		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_07785.1
IL_6V3D_0971/AN1/2508:2509,
1/AN1/2567:2570		No text annotation
homologous
IL_4WF9_096
IL_42626.2
IL_6V3D_0981/AN1/2518:2519,
1/AN1/2536:2539		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_02555.1
IL_6V3D_1001/AN1/2587:2588,
1/AN1/2597:2599		No text annotation
IL_6V3D_1011/AN1/2632:2636,
1/AN1/2770:2778		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_6V3D_1021/AN1/2647:2654,
1/AN1/2659:2665		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6V3D_1031/AN1/2676:2680,
1/AN1/2721:2723		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_6V3D_1041/AN1/2683:2687,
1/AN1/2714:2718		No text annotation
homologous
IL_4WF9_102
IL_23774.1
IL_6V3D_1051/AN1/2691:2692,
1/AN1/2707:2710		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_6V3D_1061/AN1/2733:2738,
1/AN1/2758:2763		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_6V3D_1071/AN1/2791:2792,
1/AN1/2795:2797		Single bulged U
geometric
IL_5TBW_050
NA
IL_6V3D_1081/AN1/2802:2807,
1/AN1/2885:2888		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_6V3D_1091/AN1/2834:2835,
1/AN1/2874:2876		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_6V3D_1101/AN1/2839:2842,
1/AN1/2866:2870		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_6V3D_1111/AN1/2843:2848,
1/AN1/2861:2865		tHS double platform
homologous
IL_5J7L_354
IL_70411.2
IL_6V3D_1121/B/15:16,
1/B/63:65		Major groove intercalation
homologous
IL_4V9F_101
IL_31462.5
IL_6V3D_1131/B/20:26,
1/B/54:59		No text annotation
IL_6V3D_1141/B/28:36,
1/B/42:52		No text annotation
IL_6V3D_1151/B/69:77,
1/B/94:102		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA

Problematic loops

#loop idProblemSequence
IL_6V3D_116Isolated cWH basepair
IL_6V3D_052No text annotation
IL_6V3D_120No text annotation
IL_6V3D_122No text annotation
IL_6V3D_076No text annotation
IL_6V3D_077Isolated non-canonical cWW pair
IL_6V3D_125No text annotation
IL_6V3D_092Major groove platform with extra pair
IL_6V3D_093No text annotation
IL_6V3D_095No text annotation
IL_6V3D_129Isolated non-canonical cWW contact
IL_6V3D_099No text annotation
IL_6V3D_130No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6V3D_0011/AN1/37:38,
1/AN1/473:480,
1/AN1/508:509		No text annotation
homologous
J3_5J7L_036
J3_60031.2
J3_6V3D_0151/AN1/39:42,
1/AN1/444:460,
1/AN1/467:472		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_6V3D_0021/AN1/63:64,
1/AN1/77:83,
1/AN1/117:121		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_6V3D_0161/AN1/299:303,
1/AN1/318:327,
1/AN1/339:343		No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_6V3D_0031/AN1/681:687,
1/AN1/771:773,
1/AN1/789:792		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_6V3D_0041/AN1/696:698,
1/AN1/730:734,
1/AN1/758:761		No text annotation
homologous
J3_7RQB_005
NA
J3_6V3D_0051/AN1/1052:1054,
1/AN1/1078:1087,
1/AN1/1098:1101		No text annotation
J3_6V3D_0061/AN1/1293:1298,
1/AN1/1623:1625,
1/AN1/1637:1640		No text annotation
homologous
J3_7A0S_006
J3_32852.6
J3_6V3D_0071/AN1/1301:1304,
1/AN1/1603:1609,
1/AN1/1618:1620		No text annotation
homologous
J3_5J7L_042
J3_19545.2
J3_6V3D_0081/AN1/1339:1344,
1/AN1/1377:1380,
1/AN1/1397:1398		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_6V3D_0181/AN1/1419:1424,
1/AN1/1562:1563,
1/AN1/1566:1572		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_6V3D_0191/AN1/1439:1440,
1/AN1/1461:1466,
1/AN1/1516:1545		No text annotation
J3_6V3D_0091/AN1/2087:2089,
1/AN1/2192:2196,
1/AN1/2219:2224		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_6V3D_0211/AN1/2278:2280,
1/AN1/2380:2391,
1/AN1/2417:2423		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_6V3D_0101/AN1/2291:2295,
1/AN1/2313:2319,
1/AN1/2328:2333		No text annotation
J3_6V3D_0111/AN1/2513:2516,
1/AN1/2541:2543,
1/AN1/2557:2563		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_6V3D_0121/AN1/2785:2788,
1/AN1/2800:2802,
1/AN1/2888:2890		No text annotation
J3_6V3D_0131/AN1/2810:2811,
1/AN1/2827:2832,
1/AN1/2878:2882		No text annotation
homologous
J3_7RQB_014
NA
J3_6V3D_0141/B/8:14,
1/B/66:67,
1/B/104:107		No text annotation
homologous
J3_7A0S_021
J3_47324.1
J4_6V3D_0011/AN1/275:276,
1/AN1/369:374,
1/AN1/398:405,
1/AN1/420:423		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_6V3D_0021/AN1/299:303,
1/AN1/318:321,
1/AN1/325:327,
1/AN1/339:343		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_6V3D_0031/AN1/599:602,
1/AN1/622:626,
1/AN1/633:636,
1/AN1/648:654		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_6V3D_0041/AN1/1265:1271,
1/AN1/1289:1290,
1/AN1/1643:1646,
1/AN1/2005:2006		No text annotation
homologous
J4_7A0S_004
J4_64571.5
J4_6V3D_0051/AN1/1305:1309,
1/AN1/1333:1338,
1/AN1/1399:1400,
1/AN1/1595:1602		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_6V3D_0061/AN1/1308:1309,
1/AN1/1333:1338,
1/AN1/1399:1400,
1/AN1/1595:1601		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_6V3D_0071/AN1/1768:1772,
1/AN1/1784:1788,
1/AN1/1823:1826,
1/AN1/1971:1975		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_6V3D_0081/AN1/1829:1831,
1/AN1/1901:1902,
1/AN1/1920:1929,
1/AN1/1963:1968		No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_6V3D_0111/AN1/2281:2285,
1/AN1/2339:2343,
1/AN1/2366:2368,
1/AN1/2377:2379		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_6V3D_0101/AN1/2639:2642,
1/AN1/2670:2672,
1/AN1/2727:2731,
1/AN1/2765:2767		No text annotation
J5_6V3D_0011/AN1/54:61,
1/AN1/123:128,
1/AN1/137:138,
1/AN1/155:157,
1/AN1/183:185		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_6V3D_0021/AN1/530:532,
1/AN1/558:562,
1/AN1/575:577,
1/AN1/1256:1257,
1/AN1/2013:2014		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_6V3D_0031/AN1/582:587,
1/AN1/666:669,
1/AN1/807:810,
1/AN1/1190:1191,
1/AN1/1245:1251		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_6V3D_0041/AN1/1672:1680,
1/AN1/1704:1705,
1/AN1/1747:1748,
1/AN1/1752:1760,
1/AN1/1984:1986		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_6V3D_0051/AN1/2053:2060,
1/AN1/2442:2449,
1/AN1/2496:2503,
1/AN1/2578:2584,
1/AN1/2602:2607		No text annotation
J5_6V3D_0061/AN1/2070:2073,
1/AN1/2239:2242,
1/AN1/2254:2255,
1/AN1/2277:2278,
1/AN1/2423:2431		No text annotation
homologous
J5_7A0S_007
J5_39529.1
J6_6V3D_0011/AN1/52:53,
1/AN1/186:190,
1/AN1/221:231,
1/AN1/238:242,
1/AN1/269:273,
1/AN1/425:432		No text annotation
J6_6V3D_0031/AN1/2070:2073,
1/AN1/2239:2242,
1/AN1/2254:2255,
1/AN1/2277:2280,
1/AN1/2380:2391,
1/AN1/2417:2431		No text annotation
J6_6V3D_0021/AN1/2070:2073,
1/AN1/2239:2242,
1/AN1/2254:2255,
1/AN1/2277:2280,
1/AN1/2380:2392,
1/AN1/2416:2431		No text annotation
J7_6V3D_0011/AN1/15:22,
1/AN1/524:530,
1/AN1/2014:2019,
1/AN1/2036:2039,
1/AN1/2621:2626,
1/AN1/2784:2785,
1/AN1/2890:2891		No text annotation
J7_6V3D_0021/AN1/815:820,
1/AN1/833:836,
1/AN1/937:943,
1/AN1/968:973,
1/AN1/984:988,
1/AN1/1161:1162,
1/AN1/1180:1185		No text annotation

Problematic loops

#loop idProblemSequence
J3_6V3D_017No text annotation
J3_6V3D_020No text annotation
J4_6V3D_009No text annotation

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