HL_6V3E_007

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3E_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.1506

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6V3E|1|sN1|U|292
6V3E|1|sN1|G|293
6V3E|1|sN1|A|294
6V3E|1|sN1|G|295
6V3E|1|sN1|A|296
6V3E|1|sN1|G|297

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17