HL_6V3E_025

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6V3E|1|sN1|A|1089, 6V3E|1|sN1|G|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3E_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.5208

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6V3E|1|sN1|G|1086
6V3E|1|sN1|U|1087
6V3E|1|sN1|U|1088
6V3E|1|sN1|A|1089
6V3E|1|sN1|A|1090
6V3E|1|sN1|G|1091
6V3E|1|sN1|U|1092
6V3E|1|sN1|C|1093

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2