HL_6V3E_034

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUUUCGGAU

Length

9 nucleotides

Bulged bases

6V3E|1|sN1|U|1133, 6V3E|1|sN1|C|1134

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3E_034 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3425

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6V3E|1|sN1|A|1130
6V3E|1|sN1|U|1131
6V3E|1|sN1|U|1132
6V3E|1|sN1|U|1133
6V3E|1|sN1|C|1134
6V3E|1|sN1|G|1135
6V3E|1|sN1|G|1136
6V3E|1|sN1|A|1137
6V3E|1|sN1|U|1138

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9