HL_6VLZ_052

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

6VLZ|1|AA|C|1151, 6VLZ|1|AA|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_052 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3013

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6VLZ|1|AA|C|1150
6VLZ|1|AA|C|1151
6VLZ|1|AA|A|1152
6VLZ|1|AA|C|1153
6VLZ|1|AA|A|1154
6VLZ|1|AA|G|1155

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Aurora kinase A-interacting protein

Chain AL

28S ribosomal protein S15, mitochondrial