HL_6VLZ_056

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

6VLZ|1|AA|C|1376, 6VLZ|1|AA|C|1377, 6VLZ|1|AA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_056 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3892

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6VLZ|1|AA|U|1373
6VLZ|1|AA|A|1374
6VLZ|1|AA|C|1375
6VLZ|1|AA|C|1376
6VLZ|1|AA|C|1377
6VLZ|1|AA|C|1378
6VLZ|1|AA|A|1379

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AX

28S ribosomal protein S29, mitochondrial