HL_6VLZ_057

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UAUGAAACUUA

Length

11 nucleotides

Bulged bases

6VLZ|1|AA|C|1405, 6VLZ|1|AA|U|1406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_057 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3191

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6VLZ|1|AA|U|1398
6VLZ|1|AA|A|1399
6VLZ|1|AA|U|1400
6VLZ|1|AA|G|1401
6VLZ|1|AA|A|1402
6VLZ|1|AA|A|1403
6VLZ|1|AA|A|1404
6VLZ|1|AA|C|1405
6VLZ|1|AA|U|1406
6VLZ|1|AA|U|1407
6VLZ|1|AA|A|1408

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial