HL_6VMI_024

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GUACCCUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_024 not in the Motif Atlas

Geometric match to HL_5WTI_001

Geometric discrepancy: 0.3813

The information below is about HL_5WTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65256.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6VMI|1|A|G|2574
6VMI|1|A|U|2575
6VMI|1|A|A|2576
6VMI|1|A|C|2577
6VMI|1|A|C|2578
6VMI|1|A|C|2579
6VMI|1|A|U|2580
6VMI|1|A|A|2581
6VMI|1|A|A|2582
6VMI|1|A|C|2583

Current chains

Chain A

16s rRNA

Nearby chains

Chain A6

P-site and E-site tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain v

Elongation factor G, mitochondrial