HL_6VMI_025

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

6VMI|1|A|U|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_025 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.3214

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6VMI|1|A|C|2612
6VMI|1|A|U|2613
6VMI|1|A|U|2614
6VMI|1|A|A|2615
6VMI|1|A|A|2616
6VMI|1|A|A|2617
6VMI|1|A|U|2618
6VMI|1|A|A|2619
6VMI|1|A|G|2620

Current chains

Chain A

16s rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain L

39S ribosomal protein L14, mitochondrial