HL_6VMI_028

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UUGGGGCGA

Length

9 nucleotides

Bulged bases

6VMI|1|A|G|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_028 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.307

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6VMI|1|A|U|2812
6VMI|1|A|U|2813
6VMI|1|A|G|2814
6VMI|1|A|G|2815
6VMI|1|A|G|2816
6VMI|1|A|G|2817
6VMI|1|A|C|2818
6VMI|1|A|G|2819
6VMI|1|A|A|2820

Current chains

Chain A

16s rRNA

Nearby chains

Chain A6

P-site and E-site tRNA

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial